Assalamualaikum,
today we learn about Protein Data Bank (PDB) using RasWin software. It's quite complicated, but interesting. We can observe the structure of protein in 3D with different kind of display such as wireframe, backbone, ball&stick and etc. We can also customize the colour according to temperature, structure, shapely and etc.
today we learn about Protein Data Bank (PDB) using RasWin software. It's quite complicated, but interesting. We can observe the structure of protein in 3D with different kind of display such as wireframe, backbone, ball&stick and etc. We can also customize the colour according to temperature, structure, shapely and etc.
 |
| Image of PDB |
PDB was founded in 1971 by Brookhaven National Laboratory, New York. The first set of data
were entered on punched cards. Then with magnetic tapes.After that it is transferred to the Research Collaboratory for Structural Bioinformatics (RCSB) in
1998.Currently it holds 29,000 released structures.
The Protein Data Bank (PDB) is a repository for the 3-D structural data of large biological molecules, such as protein and nucleic acids.The data, typically obtained by X-ray crystallography or NMR spectroscopy and submitted by biologists and biochemists from around the world, are freely accessible on the Internet via the websites of its member organisations (PDBe, PDBj, and RCSB). The PDB is a key resource in areas of structural biology, such as structural genomic.
The example of Protein Data Bank(PDB) in 3-D structure.
 |
| Image of PDB |
The Protein Data Bank (PDB) is a repository for the 3-D structural data of large biological molecules, such as protein and nucleic acids.The data, typically obtained by X-ray crystallography or NMR spectroscopy and submitted by biologists and biochemists from around the world, are freely accessible on the Internet via the websites of its member organisations (PDBe, PDBj, and RCSB). The PDB is a key resource in areas of structural biology, such as structural genomic.
The example of Protein Data Bank(PDB) in 3-D structure.
THE
STRUCTURE OF CLPP AT 2.3 ANGSTROM RESOLUTION SUGGESTS A MODEL FOR ATP-DEPENDENT
PROTEOLYSIS
Authors
|
Wang, J.
|
Classification
|
Peptidase
|
Type
|
protein
|
Display mode
|
Ribbons
|
Colour
|
Chain
|
THE GEOMETRY OF THE REACTIVE SITE AND OF THE PEPTIDE GROUPS IN TRYPSIN, TRYPSINOGEN AND ITS COMPLEXES WITH INHIBITORS
Authors
|
Huber,R.
|
Classification
|
Complex (protienase/inhibitor)
|
Type
|
Protein
|
Display mode
|
Strands
|
Colour
|
Group
|
S146A MUTANT OF THERMOMYCES (HUMICOLA)
LANUGINOSA LIPASE COMPLEX WITH OLEIC ACID
Authors
|
Brzozowski,A.M.
|
Classification
|
Lipase
|
| Type |
Protein
|
Display mode
|
Spacefill
|
Colour
|
Temperature
|
The structure of human pancreatic alpha-amylase at 1.8 angstroms
resolution and comparisons with related enzymes
Authors
|
Luo,Y.
|
Classification
|
Hydrolase
(o Glycosyl) |
Type
|
Protein
|
Display mode
|
Backbone
|
Colour
|
Structure
|
No comments:
Post a Comment